Single-cell transcriptomics captures features of human midbrain development and dopamine neuron diversity in brain organoids

Nat Commun. 2021 Dec 15;12(1):7302. doi: 10.1038/s41467-021-27464-5.

Alessandro Fiorenzano 1Edoardo Sozzi 2Marcella Birtele 2Janko Kajtez 2Jessica Giacomoni 2Fredrik Nilsson 2Andreas Bruzelius 3Yogita Sharma 2Yu Zhang 2Bengt Mattsson 2Jenny Emnéus 4Daniella Rylander Ottosson 3Petter Storm 2Malin Parmar 2

Abstract

Three-dimensional brain organoids have emerged as a valuable model system for studies of human brain development and pathology. Here we establish a midbrain organoid culture system to study the developmental trajectory from pluripotent stem cells to mature dopamine neurons. Using single cell RNA sequencing, we identify the presence of three molecularly distinct subtypes of human dopamine neurons with high similarity to those in developing and adult human midbrain. However, despite significant advancements in the field, the use of brain organoids can be limited by issues of reproducibility and incomplete maturation which was also observed in this study. We therefore designed bioengineered ventral midbrain organoids supported by recombinant spider-silk microfibers functionalized with full-length human laminin. We show that silk organoids reproduce key molecular aspects of dopamine neurogenesis and reduce inter-organoid variability in terms of cell type composition and dopamine neuron formation.

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